Language Breakdown
Lines of code distribution across 12 owned repositories
78.3M
Total LOC
HTML
75,843,490 lines
96.8%
N/A
R
1,228,315 lines
1.6%
N/A
C++
522,091 lines
0.7%
N/A
Python
373,176 lines
0.5%
N/A
C
273,577 lines
0.3%
N/A
Other
95,730 lines
0.1%
N/A
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Repos
31
PRs
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Contribution activity over the past year
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251
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219
Commits
24
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Top Repositories
gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
220
54
Python
progressionEstimation
R package for the estimation of microbial progression rates
2
1
R
multilocusNFDS
2
4
C++
recognise
Precise inference of bacterial recombinations
1
0
Python
pneumo-cgmlst
Core genome COGs for S. pneumoniae from Corander et al 2017 Nat. Ecol. Evol. 1:1950-60
1
0
Strep_postThesis
🦠🔬✨🧫✨🔬🦠
0
0
R
recombination-conflict
0
0
HTML
NP_AMR_analysis
Analyses of nasopharyngeal colonisation
0
0
HTML
RMV_PoreC
Code for the analysis of Pore-C data from S. pneumoniae RMV7 and RMV8
0
0
prophage_transformation_analysis
0
0
R
Open Source Impact
Contributions to external projects
116 merged PRs
Contributed to 2 repositories